Cyclic nucleotides are second messengers generated by cyclase enzymes from precursor triphosphates and hydrolysed by phosphodiesterases. The cellular actions of these cyclic nucleotides are mediated through activation of protein kinases (cAMP- and cGMP-dependent protein kinases), ion channels (cyclic nucleotide-gated, CNG, and hyperpolarization and cyclic nucleotide-gated, HCN) and guanine nucleotide exchange factors (GEFs, Epac).
Adenylyl cyclases
Adenylyl cyclase (ENSF00000000188), E.C. 4.6.1.1, converts ATP to cAMP and diphosphate. Mammalian membrane-bound adenylyl cyclases are typically made up of two clusters of six TM domains separating two intracellular, overlapping catalytic domains that are the target for the nonselective activators forskolin, NKH477 (except AC9, [39]) and Gαs (the stimulatory G protein α subunit). adenosine and its derivatives (e.g. 2',5'-dideoxyadenosine), acting through the P-site, appear to be physiological inhibitors of adenylyl cyclase activity [51]. Three families of adenylyl cyclase are distinguishable: calmodulin-stimulated (AC1, AC3 and AC8), Ca2+-inhibitable (AC5 and AC6) and Ca2+-insensitive (AC2, AC4 and AC7) forms.
Unless otherwise stated all data refer to the human proteins. Gene information is provided for human (Hs), mouse (Mm) and rat (Rn).
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NO has been proposed to inhibit AC5 and AC6 selectively [23], although it is unclear whether this phenomenon is of physiological significance. A soluble adenylyl cyclase has been described (ENSG00000143199, [3]), unaffected by either Gα or Gβγ subunits, which has been suggested to be a cytoplasmic bicarbonate (pH-insensitive) sensor [6].
Soluble guanylyl cyclase
Soluble guanylyl cyclase (GTP diphosphate-lyase (cyclising)), E.C. 4.6.1.2, is a heterodimer comprising α and β chains, both of which have two subtypes in man (predominantly α1β1; [58]). A haem group is associated with the β chain and is the target for the endogenous ligand NO (NO•), and, potentially, carbon monoxide [16]. The enzyme converts guanosine-5'-triphosphate (GTP) to the intracellular second messenger 3',5'-guanosine monophosphate (cGMP).
Unless otherwise stated all data refer to the human proteins. Gene information is provided for human (Hs), mouse (Mm) and rat (Rn).
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Soluble guanylyl cyclase Show »« Hide
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Soluble guanylyl cyclase α 1 subunit Show »« Hide
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Soluble guanylyl cyclase α 2 subunit Show »« Hide
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Soluble guanylyl cyclase β 1 subunit Show »« Hide
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Soluble guanylyl cyclase β 2 subunit Show »« Hide
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ODQ also shows activity at other haem-containing proteins [12], while YC1 may also inhibit cGMP-hydrolysing phosphodiesterases [15,18].
Exchange protein activated by cyclic AMP (Epac)
Epacs are members of a family of guanine nucleotide exchange factors (ENSFM00250000000899), which also includes RapGEF5 (GFR, KIAA0277, MR-GEF, ENSG00000136237) and RapGEFL1 (Link-GEFII, ENSG00000108352). They are activated endogenously by cAMP and with some pharmacological selectivity by 8-pCPT-2'-O-Me-cAMP [10]. Once activated, Epacs induce an enhanced activity of the monomeric G proteins, Rap1 and Rap2 by facilitating binding of GTP in place of GDP, leading to activation of phospholipase C [42].
Unless otherwise stated all data refer to the human proteins. Gene information is provided for human (Hs), mouse (Mm) and rat (Rn).
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Phosphodiesterases, 3',5'-cyclic nucleotide
3',5'-Cyclic nucleotide phosphodiesterases (PDEs, 3',5'-cyclic-nucleotide 5'-nucleotidohydrolase), E.C. 3.1.4.17, catalyse the hydrolysis of a 3',5'-cyclic nucleotide (usually cAMP or cGMP). IBMX is a nonselective inhibitor with an IC50 value in the millimolar range for all isoforms except PDE 8A, 8B and 9A. A 2',3'-cyclic nucleotide 3'-phosphodiesterase (E.C. 3.1.4.37 CNPase) activity is associated with myelin formation in the development of the CNS.
Unless otherwise stated all data refer to the human proteins. Gene information is provided for human (Hs), mouse (Mm) and rat (Rn).
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PDE1A, 1B and 1C appear to act as soluble homodimers, while PDE2A is a membrane-bound homodimer. EHNA is also an inhibitor of adenosine deaminase (E.C. 3.5.4.4). PDE3A and PDE3B are membrane-bound.
PDE4 isoforms are essentially cAMP specific. The potency of YM976 at other members of the PDE4 family has not been reported. PDE4B–D long forms are inhibited by extracellular signal-regulated kinase (ERK)-mediated phosphorylation [24-25]. PDE4A–D splice variants can be membrane-bound or cytosolic [26]. PDE4 isoforms may be labelled with [3H]rolipram.
PDE6 is a membrane-bound tetramer composed of two catalytic chains (PDE6A or PDE6C and PDE6B), an inhibitory chain (PDE6G or PDE6H) and the PDE6D chain. The enzyme is essentially cGMP specific and is activated by the α-subunit of transducin (Gαt) and inhibited by sildenafil, zaprinast and dipyridamole with potencies lower than those observed for PDE5A. Defects in PDE6B are a cause of retinitis pigmentosa and congenital stationary night blindness.
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