oxymetazoline   Click here for help

GtoPdb Ligand ID: 124

Synonyms: Afrin® | oxymethazoline | SCH-9384 | Upneeq® (opthalmic solution) | Vicks Sinex®
Approved drug PDB Ligand
oxymetazoline is an approved drug (FDA (1986))
Compound class: Synthetic organic
Comment: Oxymetazoline is a selective α1-adrenoceptor agonist and α2-adrenoceptor partial agonist with vasoconstricting properties.
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Ligand Activity Visualisation Charts

These are box plot that provide a unique visualisation, summarising all the activity data for a ligand taken from ChEMBL and GtoPdb across multiple targets and species. Click on a plot to see the median, interquartile range, low and high data points. A value of zero indicates that no data are available. A separate chart is created for each target, and where possible the algorithm tries to merge ChEMBL and GtoPdb targets by matching them on name and UniProt accession, for each available species. However, please note that inconsistency in naming of targets may lead to data for the same target being reported across multiple charts.

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View interactive charts of activity data across species
2D Structure
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2D Structure

An image of the ligand's 2D structure. For small molecules with SMILES these are drawn using the NCI/CADD Chemical Identifier Resolver. Click on the image to access the chemical structure search tool with the ligand pre-loaded in the structure editor. For other types of ligands, e.g. longer nucleotides and peptides, a manually drawn representation of the molecule may be provided.

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Click here for structure editor
Physico-chemical Properties
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Physico-chemical Properties

Calculated molecular properties are available for small molecules and natural products (not peptides). Properties were generated using the CDK toolkit. All properties were selected to enable the prediction of the Lipinski Rule-of-Five profile or ‘druglikeness’ for each ligand. For more info on each category see the help pages.

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Hydrogen bond acceptors 2
Hydrogen bond donors 2
Rotatable bonds 3
Topological polar surface area 44.62
Molecular weight 260.19
XLogP 3.36
No. Lipinski's rules broken 0
SMILES / InChI / InChIKey
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SMILES / InChI / InChIKey

SMILES (Simplified Molecular Input Line Entry Specification) A specification for unambiguously describing the structure of chemical molecules using short ASCII strings. Canonical SMILES specify a unique representation of the 2D structure without chiral or isotopic specifications. Isomeric SMILES include chiral specification and isotopes.

Standard InChI (IUPAC International Chemical Identifier) and InChIKey InChI is a non-proprietary, standard, textual identifier for chemical substances designed to facilitate linking of information and database searching. An InChIKey is a simplified version of a full InChI, designed for easier web searching.

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Canonical SMILES Cc1cc(c(c(c1CC1=NCCN1)C)O)C(C)(C)C
Isomeric SMILES Cc1cc(c(c(c1CC1=NCCN1)C)O)C(C)(C)C
InChI InChI=1S/C16H24N2O/c1-10-8-13(16(3,4)5)15(19)11(2)12(10)9-14-17-6-7-18-14/h8,19H,6-7,9H2,1-5H3,(H,17,18)
InChI Key WYWIFABBXFUGLM-UHFFFAOYSA-N
Selectivity at GPCRs
Key to terms and symbols Click column headers to sort
Target Sp. Type Action Value Parameter Concentration range (M) Reference
5-HT1B receptor Hs Agonist Full agonist 9.5 pKi - 7
⤷ pKi 9.5 [7]
5-HT1D receptor Hs Agonist Partial agonist 9.4 pKi - 7
⤷ pKi 9.4 [7]
α2A-adrenoceptor Primary target of this compound Hs Agonist Partial agonist 7.3 – 8.6 pKi - 5,8,11,16
⤷ pKi 7.3 – 8.6 [5,8,11,16]
α1A-adrenoceptor Primary target of this compound Hs Agonist Full agonist 7.2 – 8.2 pKi - 1-2,4,10,12-15
⤷ pKi 7.2 – 8.2 [1-2,4,10,12-15]
5-HT2C receptor Hs Agonist Full agonist 6.3 – 6.8 pKi - 3
⤷ pKi 6.3 – 6.8 [3]
α2C-adrenoceptor Hs Agonist Agonist 6.4 – 6.7 pKi - 5-6,11,16
⤷ pKi 6.4 – 6.7 [5-6,11,16]
α1D-adrenoceptor Rn Agonist Partial agonist 6.2 pKi - 9
⤷ pKi 6.2 [9]
α1D-adrenoceptor Hs Agonist Partial agonist 5.3 – 6.4 pKi - 10,12,14
⤷ pKi 5.3 – 6.4 [10,12,14]
α1B-adrenoceptor Hs Agonist Full agonist 5.2 – 6.5 pKi - 10,12,14
⤷ pKi 5.2 – 6.5 [10,12,14]
α2B-adrenoceptor Hs Agonist Agonist 5.0 – 6.2 pKi - 5,11,16
⤷ pKi 5.0 – 6.2 [5,11,16]
α1A-adrenoceptor Hs Agonist Full agonist 7.2 – 9.3 pEC50 - 1-2,12
⤷ pEC50 7.2 – 9.3 [1-2,12]
α2B-adrenoceptor Hs Agonist Agonist 7.7 pEC50 - 11
⤷ pEC50 7.7 [11]
Description: cAMP generation
α1B-adrenoceptor Hs Agonist Full agonist 6.7 – 7.4 pEC50 - 12
⤷ pEC50 6.7 – 7.4 [12]
α2C-adrenoceptor Hs Agonist Agonist 6.9 pEC50 - 6
⤷ pEC50 6.9 [6]
Description: β-arrestin recruitment and internalization
α1D-adrenoceptor Hs Agonist Partial agonist 5.6 – 7.3 pEC50 - 12
⤷ pEC50 5.6 – 7.3 [12]
α2B-adrenoceptor Hs Agonist Agonist 8.8 pIC50 - 11
⤷ pIC50 8.8 [11]
Description: inhibition of forskolin stimulated cAMP generation
α2A-adrenoceptor Hs Agonist Partial agonist 8.4 pIC50 - 11
⤷ pIC50 8.4 [11]
Description: inhibition of forskolin stimulated cAMP generation
α2C-adrenoceptor Hs Agonist Agonist 7.4 – 8.2 pIC50 - 6,11
⤷ pIC50 7.4 – 8.2 [6,11]
Description: inhibition of cAMP production
Ligand mentioned in the following text fields
Adrenoceptors comments