AG-17724   Click here for help

GtoPdb Ligand ID: 11400

Synonyms: AG17724 | compound 7 [PMID: 25091930]
PDB Ligand
Compound class: Synthetic organic
Comment: AG-17724 is an experimental inhibitor of the catalytic activity of PPIase PIN1 (peptidylprolyl cis/trans isomerase, NIMA-interacting 1) in biochemical assay [1]. It has limited solubility and little activity in cellular assays. Compound 20 [PMID: 25091930] from the same study has improved solubility, retains inhibition potency and is active in a cell-based proliferation assay.
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Ligand Activity Visualisation Charts

These are box plot that provide a unique visualisation, summarising all the activity data for a ligand taken from ChEMBL and GtoPdb across multiple targets and species. Click on a plot to see the median, interquartile range, low and high data points. A value of zero indicates that no data are available. A separate chart is created for each target, and where possible the algorithm tries to merge ChEMBL and GtoPdb targets by matching them on name and UniProt accession, for each available species. However, please note that inconsistency in naming of targets may lead to data for the same target being reported across multiple charts.

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View interactive charts of activity data across species
2D Structure
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2D Structure

An image of the ligand's 2D structure. For small molecules with SMILES these are drawn using the NCI/CADD Chemical Identifier Resolver. Click on the image to access the chemical structure search tool with the ligand pre-loaded in the structure editor. For other types of ligands, e.g. longer nucleotides and peptides, a manually drawn representation of the molecule may be provided.

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Physico-chemical Properties
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Physico-chemical Properties

Calculated molecular properties are available for small molecules and natural products (not peptides). Properties were generated using the CDK toolkit. All properties were selected to enable the prediction of the Lipinski Rule-of-Five profile or ‘druglikeness’ for each ligand. For more info on each category see the help pages.

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Hydrogen bond acceptors 5
Hydrogen bond donors 3
Rotatable bonds 6
Topological polar surface area 95.08
Molecular weight 377.12
XLogP 3.51
No. Lipinski's rules broken 0
SMILES / InChI / InChIKey
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SMILES / InChI / InChIKey

SMILES (Simplified Molecular Input Line Entry Specification) A specification for unambiguously describing the structure of chemical molecules using short ASCII strings. Canonical SMILES specify a unique representation of the 2D structure without chiral or isotopic specifications. Isomeric SMILES include chiral specification and isotopes.

Standard InChI (IUPAC International Chemical Identifier) and InChIKey InChI is a non-proprietary, standard, textual identifier for chemical substances designed to facilitate linking of information and database searching. An InChIKey is a simplified version of a full InChI, designed for easier web searching.

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Canonical SMILES Fc1ccc2c(c1)nc([nH]2)C[C@H](C(=O)O)NC(=O)c1ccc2c(c1)cccc2
Isomeric SMILES Fc1ccc2c(c1)nc([nH]2)C[C@H](C(=O)O)NC(=O)c1ccc2c(c1)cccc2
InChI InChI=1S/C21H16FN3O3/c22-15-7-8-16-17(10-15)24-19(23-16)11-18(21(27)28)25-20(26)14-6-5-12-3-1-2-4-13(12)9-14/h1-10,18H,11H2,(H,23,24)(H,25,26)(H,27,28)/t18-/m1/s1
InChI Key NKMPZFCFXCJBEY-GOSISDBHSA-N
Classification Click here for help
Compound class Synthetic organic
IUPAC Name Click here for help
(2R)-3-(6-fluoro-1H-benzimidazol-2-yl)-2-(naphthalene-2-carbonylamino)propanoic acid
Synonyms Click here for help
AG17724 | compound 7 [PMID: 25091930]
Database Links Click here for help
BindingDB Ligand 50056214
CAS Registry No. 884033-66-3 (source: PubChem)
ChEMBL Ligand CHEMBL3322219
GtoPdb PubChem SID 440816769
PubChem CID 11675244
RCSB PDB Ligand 39X
Search Google for chemical match using the InChIKey NKMPZFCFXCJBEY-GOSISDBHSA-N
Search Google for chemicals with the same backbone NKMPZFCFXCJBEY
UniChem Compound Search for chemical match using the InChIKey NKMPZFCFXCJBEY-GOSISDBHSA-N
UniChem Connectivity Search for chemical match using the InChIKey NKMPZFCFXCJBEY-GOSISDBHSA-N