solanidine   Click here for help

GtoPdb Ligand ID: 12500

Compound class: Natural product or derivative
Comment: Solanidine is a plant-derived steroidal alkaloid compound, that is present in the Solanaceae (potato) family, Fritillaria species, and Veratrum grandiflorum [2]. Its metabolism is being investigated as a method of predicting an individual's CYP2D6 activity [1,3-4].
2D Structure
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2D Structure

An image of the ligand's 2D structure. For small molecules with SMILES these are drawn using the NCI/CADD Chemical Identifier Resolver. Click on the image to access the chemical structure search tool with the ligand pre-loaded in the structure editor. For other types of ligands, e.g. longer nucleotides and peptides, a manually drawn representation of the molecule may be provided.

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Physico-chemical Properties
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Physico-chemical Properties

Calculated molecular properties are available for small molecules and natural products (not peptides). Properties were generated using the CDK toolkit. All properties were selected to enable the prediction of the Lipinski Rule-of-Five profile or ‘druglikeness’ for each ligand. For more info on each category see the help pages.

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Hydrogen bond acceptors 2
Hydrogen bond donors 1
Rotatable bonds 0
Topological polar surface area 23.47
Molecular weight 397.64
XLogP 6.14
No. Lipinski's rules broken 1
SMILES / InChI / InChIKey
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SMILES / InChI / InChIKey

SMILES (Simplified Molecular Input Line Entry Specification) A specification for unambiguously describing the structure of chemical molecules using short ASCII strings. Canonical SMILES specify a unique representation of the 2D structure without chiral or isotopic specifications. Isomeric SMILES include chiral specification and isotopes.

Standard InChI (IUPAC International Chemical Identifier) and InChIKey InChI is a non-proprietary, standard, textual identifier for chemical substances designed to facilitate linking of information and database searching. An InChIKey is a simplified version of a full InChI, designed for easier web searching.

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Canonical SMILES C[C@H]1CC[C@@H]2[C@@H](C)[C@H]3[C@H](C[C@H]4[C@@H]5CC=C6C[C@H](CC[C@]6(C)[C@H]5CC[C@@]43C)O)N2C1
Isomeric SMILES C[C@H]1CC[C@@H]2[C@H]([C@H]3[C@@H](N2C1)C[C@@H]4[C@@]3(CC[C@H]5[C@H]4CC=C6[C@@]5(CC[C@@H](C6)O)C)C)C
InChI InChI=1S/C27H43NO/c1-16-5-8-23-17(2)25-24(28(23)15-16)14-22-20-7-6-18-13-19(29)9-11-26(18,3)21(20)10-12-27(22,25)4/h6,16-17,19-25,29H,5,7-15H2,1-4H3/t16-,17+,19-,20+,21-,22-,23+,24-,25-,26-,27-/m0/s1
InChI Key JVKYZPBMZPJNAJ-OQFNDJACSA-N
Classification Click here for help
Compound class Natural product or derivative
Database Links Click here for help
ChEBI CHEBI:28374
ChEMBL Ligand CHEMBL1980466
GtoPdb PubChem SID 479821290
PubChem CID 65727
Search Google for chemical match using the InChIKey JVKYZPBMZPJNAJ-OQFNDJACSA-N
Search Google for chemicals with the same backbone JVKYZPBMZPJNAJ
UniChem Compound Search for chemical match using the InChIKey JVKYZPBMZPJNAJ-OQFNDJACSA-N
UniChem Connectivity Search for chemical match using the InChIKey JVKYZPBMZPJNAJ-OQFNDJACSA-N