ACHN-975   Click here for help

GtoPdb Ligand ID: 13333

PDB Ligand
Compound class: Synthetic organic
Comment: ACHN-975 is the hit molecule from a series of antibacterial compounds that target UDP-[3-O-(R)-3-hydroxymyristoyl]-N-acetylglucosamine deacetylase (LpxC), an enzyme in the lipopolysaccharide synthesis pathway [1].
2D Structure
Click here for help

2D Structure

An image of the ligand's 2D structure. For small molecules with SMILES these are drawn using the NCI/CADD Chemical Identifier Resolver. Click on the image to access the chemical structure search tool with the ligand pre-loaded in the structure editor. For other types of ligands, e.g. longer nucleotides and peptides, a manually drawn representation of the molecule may be provided.

✖
Click here for structure editor
Physico-chemical Properties
Click here for help

Physico-chemical Properties

Calculated molecular properties are available for small molecules and natural products (not peptides). Properties were generated using the CDK toolkit. All properties were selected to enable the prediction of the Lipinski Rule-of-Five profile or ‘druglikeness’ for each ligand. For more info on each category see the help pages.

✖
Hydrogen bond acceptors 5
Hydrogen bond donors 5
Rotatable bonds 7
Topological polar surface area 124.68
Molecular weight 369.42
XLogP 0.54
No. Lipinski's rules broken 0
SMILES / InChI / InChIKey
Click here for help

SMILES / InChI / InChIKey

SMILES (Simplified Molecular Input Line Entry Specification) A specification for unambiguously describing the structure of chemical molecules using short ASCII strings. Canonical SMILES specify a unique representation of the 2D structure without chiral or isotopic specifications. Isomeric SMILES include chiral specification and isotopes.

Standard InChI (IUPAC International Chemical Identifier) and InChIKey InChI is a non-proprietary, standard, textual identifier for chemical substances designed to facilitate linking of information and database searching. An InChIKey is a simplified version of a full InChI, designed for easier web searching.

✖
Canonical SMILES CC(C)([C@@H](C(=O)NO)NC(=O)C1=CC=C(C#CC#C[C@@H]2C[C@H]2CO)C=C1)N
Isomeric SMILES CC(C)([C@@H](C(=O)NO)NC(=O)C1=CC=C(C=C1)C#CC#C[C@@H]2C[C@H]2CO)N
InChI InChI=1S/C20H23N3O4/c1-20(2,21)17(19(26)23-27)22-18(25)14-9-7-13(8-10-14)5-3-4-6-15-11-16(15)12-24/h7-10,15-17,24,27H,11-12,21H2,1-2H3,(H,22,25)(H,23,26)/t15-,16+,17-/m1/s1
InChI Key GOCUUDXEOKIQRU-IXDOHACOSA-N
Classification Click here for help
Compound class Synthetic organic
IUPAC Name Click here for help
N-[(2S)-3-amino-1-(hydroxyamino)-3-methyl-1-oxobutan-2-yl]-4-[4-[(1R,2R)-2-(hydroxymethyl)cyclopropyl]buta-1,3-diynyl]benzamide
Database Links Click here for help
Specialist databases
Antibiotic DB Antibiotic DB Database logo ACHN-975
Other databases
CAS Registry No. 1410809-36-7 (source: Scifinder)
ChEMBL Ligand CHEMBL3939284
GtoPdb PubChem SID 496703303
PubChem CID 71466517
RCSB PDB Ligand A5F
Search Google for chemical match using the InChIKey GOCUUDXEOKIQRU-IXDOHACOSA-N
Search Google for chemicals with the same backbone GOCUUDXEOKIQRU
UniChem Compound Search for chemical match using the InChIKey GOCUUDXEOKIQRU-IXDOHACOSA-N
UniChem Connectivity Search for chemical match using the InChIKey GOCUUDXEOKIQRU-IXDOHACOSA-N