alendronate   Click here for help

GtoPdb Ligand ID: 3141

Synonyms: ABDP | BPH 1 | Fosamax® | MK-217
Approved drug PDB Ligand
alendronate is an approved drug (FDA (1995), EMA (2005))
Compound class: Synthetic organic
Comment: Alendronate is a bisphosphonate drug.
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Ligand Activity Visualisation Charts

These are box plot that provide a unique visualisation, summarising all the activity data for a ligand taken from ChEMBL and GtoPdb across multiple targets and species. Click on a plot to see the median, interquartile range, low and high data points. A value of zero indicates that no data are available. A separate chart is created for each target, and where possible the algorithm tries to merge ChEMBL and GtoPdb targets by matching them on name and UniProt accession, for each available species. However, please note that inconsistency in naming of targets may lead to data for the same target being reported across multiple charts.

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View interactive charts of activity data across species

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View more information in the IUPHAR Pharmacology Education Project: alendronate

2D Structure
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2D Structure

An image of the ligand's 2D structure. For small molecules with SMILES these are drawn using the NCI/CADD Chemical Identifier Resolver. Click on the image to access the chemical structure search tool with the ligand pre-loaded in the structure editor. For other types of ligands, e.g. longer nucleotides and peptides, a manually drawn representation of the molecule may be provided.

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Physico-chemical Properties
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Physico-chemical Properties

Calculated molecular properties are available for small molecules and natural products (not peptides). Properties were generated using the CDK toolkit. All properties were selected to enable the prediction of the Lipinski Rule-of-Five profile or ‘druglikeness’ for each ligand. For more info on each category see the help pages.

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Hydrogen bond acceptors 8
Hydrogen bond donors 6
Rotatable bonds 5
Topological polar surface area 180.93
Molecular weight 249.02
XLogP -4.3
No. Lipinski's rules broken 1
SMILES / InChI / InChIKey
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SMILES / InChI / InChIKey

SMILES (Simplified Molecular Input Line Entry Specification) A specification for unambiguously describing the structure of chemical molecules using short ASCII strings. Canonical SMILES specify a unique representation of the 2D structure without chiral or isotopic specifications. Isomeric SMILES include chiral specification and isotopes.

Standard InChI (IUPAC International Chemical Identifier) and InChIKey InChI is a non-proprietary, standard, textual identifier for chemical substances designed to facilitate linking of information and database searching. An InChIKey is a simplified version of a full InChI, designed for easier web searching.

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Canonical SMILES NCCCC(P(=O)(O)O)(P(=O)(O)O)O
Isomeric SMILES NCCCC(P(=O)(O)O)(P(=O)(O)O)O
InChI InChI=1S/C4H13NO7P2/c5-3-1-2-4(6,13(7,8)9)14(10,11)12/h6H,1-3,5H2,(H2,7,8,9)(H2,10,11,12)
InChI Key OGSPWJRAVKPPFI-UHFFFAOYSA-N
Classification Click here for help
Compound class Synthetic organic
Approved drug? Yes (FDA (1995), EMA (2005))
IUPAC Name Click here for help
(4-amino-1-hydroxy-1-phosphonobutyl)phosphonic acid
International Nonproprietary Names Click here for help
INN number INN
6462 alendronic acid
Synonyms Click here for help
ABDP | BPH 1 | Fosamax® | MK-217
Database Links Click here for help
CAS Registry No. 66376-36-1 (source: Scifinder)
ChEMBL Ligand CHEMBL870
DrugBank Ligand DB00630
DrugCentral Ligand 112
GtoPdb PubChem SID 135649795
PubChem CID 2088
RCSB PDB Ligand 212
Search Google for chemical match using the InChIKey OGSPWJRAVKPPFI-UHFFFAOYSA-N
Search Google for chemicals with the same backbone OGSPWJRAVKPPFI
Search PubMed clinical trials alendronic acid
Search PubMed titles alendronic acid
Search PubMed titles/abstracts alendronic acid
SynPHARM 78402 (in complex with farnesyl diphosphate synthase)
7122 (in complex with farnesyl diphosphate synthase)
UniChem Compound Search for chemical match using the InChIKey OGSPWJRAVKPPFI-UHFFFAOYSA-N
UniChem Connectivity Search for chemical match using the InChIKey OGSPWJRAVKPPFI-UHFFFAOYSA-N
Wikipedia Alendronic_acid