scyllo-inositol   Click here for help

GtoPdb Ligand ID: 4649

Synonyms: AZD 103 | cocositol | quercinitol
PDB Ligand
Compound class: Metabolite
Comment: PubChem CID 892 shows the non-chiral inositol structure
2D Structure
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2D Structure

An image of the ligand's 2D structure. For small molecules with SMILES these are drawn using the NCI/CADD Chemical Identifier Resolver. Click on the image to access the chemical structure search tool with the ligand pre-loaded in the structure editor. For other types of ligands, e.g. longer nucleotides and peptides, a manually drawn representation of the molecule may be provided.

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Click here for structure editor
Physico-chemical Properties
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Physico-chemical Properties

Calculated molecular properties are available for small molecules and natural products (not peptides). Properties were generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/). All properties were selected to enable the prediction of the Lipinski Rule-of-Five profile or ‘druglikeness’ for each ligand. For more info on each category see the help pages.

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Hydrogen bond acceptors 6
Hydrogen bond donors 6
Rotatable bonds 0
Topological polar surface area 121.38
Molecular weight 180.06
XLogP -1.46
No. Lipinski's rules broken 1

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)
SMILES / InChI / InChIKey
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SMILES / InChI / InChIKey

SMILES (Simplified Molecular Input Line Entry Specification) A specification for unambiguously describing the structure of chemical molecules using short ASCII strings. Canonical SMILES specify a unique representation of the 2D structure without chiral or isotopic specifications. Isomeric SMILES include chiral specification and isotopes.

Standard InChI (IUPAC International Chemical Identifier) and InChIKey InChI is a non-proprietary, standard, textual identifier for chemical substances designed to facilitate linking of information and database searching. An InChIKey is a simplified version of a full InChI, designed for easier web searching.

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)

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Canonical SMILES OC1C(O)C(O)C(C(C1O)O)O
Isomeric SMILES O[C@@H]1[C@@H](O)[C@H](O)[C@H]([C@@H]([C@H]1O)O)O
InChI InChI=1S/C6H12O6/c7-1-2(8)4(10)6(12)5(11)3(1)9/h1-12H/t1-,2-,3+,4+,5-,6-
InChI Key CDAISMWEOUEBRE-CDRYSYESSA-N

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)
Classification Click here for help
Compound class Metabolite
IUPAC Name Click here for help
(1r,2r,3r,4r,5r,6r)-cyclohexane-1,2,3,4,5,6-hexol
Synonyms Click here for help
AZD 103 | cocositol | quercinitol
Database Links Click here for help
CAS Registry No. 488-59-5 (source: Scifinder)
ChEBI CHEBI:10642
ChEMBL Ligand CHEMBL468154
GtoPdb PubChem SID 178101366
PubChem CID 892
RCSB PDB Ligand 2H3
Search Google for chemical match using the InChIKey CDAISMWEOUEBRE-CDRYSYESSA-N
Search Google for chemicals with the same backbone CDAISMWEOUEBRE
UniChem Compound Search for chemical match using the InChIKey CDAISMWEOUEBRE-CDRYSYESSA-N
UniChem Connectivity Search for chemical match using the InChIKey CDAISMWEOUEBRE-CDRYSYESSA-N
Wikipedia Scyllo-Inositol