micronomicin   Click here for help

GtoPdb Ligand ID: 12162

Synonyms: gentamicin C2b | Sagamicin® | XK-62-2
Approved drug
micronomicin is an approved drug (Japan)
Comment: Micronomicin belongs to the aminoglycoside class of antibacterial compounds and was originally isolated from Micromonospora sagamiensis [2]. It is an analogue of gentamicin.
2D Structure
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Physico-chemical Properties
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Hydrogen bond acceptors 12
Hydrogen bond donors 8
Rotatable bonds 7
Topological polar surface area 199.73
Molecular weight 463.3
XLogP -3.34
No. Lipinski's rules broken 2
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Canonical SMILES CNC[C@@H]1CC[C@H]([C@H](O1)O[C@@H]1[C@@H](N)C[C@H]([C@@H]([C@H]1O)O[C@H]1OC[C@]([C@@H]([C@H]1O)NC)(C)O)N)N
Isomeric SMILES C[C@@]1(CO[C@@H]([C@@H]([C@H]1NC)O)O[C@H]1[C@@H](C[C@@H]([C@H]([C@@H]1O)O[C@@H]1[C@@H](CC[C@H](O1)CNC)N)N)N)O
InChI InChI=1S/C20H41N5O7/c1-20(28)8-29-19(14(27)17(20)25-3)32-16-12(23)6-11(22)15(13(16)26)31-18-10(21)5-4-9(30-18)7-24-2/h9-19,24-28H,4-8,21-23H2,1-3H3/t9-,10+,11-,12+,13-,14+,15+,16-,17+,18+,19+,20-/m0/s1
Classification Click here for help
Compound class Natural product or derivative
Approved drug? Yes (Japan)
IUPAC Name Click here for help
International Nonproprietary Names Click here for help
INN number INN
5036 micronomicin
Synonyms Click here for help
gentamicin C2b | Sagamicin® | XK-62-2
Database Links Click here for help
Specialist databases
Antibiotic DB Antibiotic DB Database logo Micronomicin, sagamicin, gentamicin C2b
Other databases
CAS Registry No. 52093-21-7 (source: Scifinder)
ChEMBL Ligand CHEMBL373081
DrugBank Ligand DB13274
DrugCentral Ligand 1801
GtoPdb PubChem SID 472319284
PubChem CID 3037206
Search Google for chemical match using the InChIKey DNYGXMICFMACRA-XHEDQWPISA-N
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UniChem Compound Search for chemical match using the InChIKey DNYGXMICFMACRA-XHEDQWPISA-N
UniChem Connectivity Search for chemical match using the InChIKey DNYGXMICFMACRA-XHEDQWPISA-N