NL13   Click here for help

GtoPdb Ligand ID: 13416

Synonyms: compound 7 [PMID: 39142876]
Compound class: Synthetic organic
Comment: NL13 is reported to behave as an inhibitor of the prostate cancer target, polo-like kinase 4 (PLK4) (IC50 2.3 μM in a biochemical assay) [1]; structure drawn from this Qiao et al. (2024) article with specified (E)/(Z) configuration on the double bonds. Mechanistically, PLK4 inhibitors disrupt mitotic spindle assembly which induces cell cycle arrest and apoptosis.
2D Structure
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2D Structure

An image of the ligand's 2D structure. For small molecules with SMILES these are drawn using the NCI/CADD Chemical Identifier Resolver. Click on the image to access the chemical structure search tool with the ligand pre-loaded in the structure editor. For other types of ligands, e.g. longer nucleotides and peptides, a manually drawn representation of the molecule may be provided.

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Physico-chemical Properties
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Physico-chemical Properties

Calculated molecular properties are available for small molecules and natural products (not peptides). Properties were generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/). All properties were selected to enable the prediction of the Lipinski Rule-of-Five profile or ‘druglikeness’ for each ligand. For more info on each category see the help pages.

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Hydrogen bond acceptors 3
Hydrogen bond donors 0
Rotatable bonds 4
Topological polar surface area 37.38
Molecular weight 400.3
XLogP 2.51
No. Lipinski's rules broken 0

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)
SMILES / InChI / InChIKey
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SMILES / InChI / InChIKey

SMILES (Simplified Molecular Input Line Entry Specification) A specification for unambiguously describing the structure of chemical molecules using short ASCII strings. Canonical SMILES specify a unique representation of the 2D structure without chiral or isotopic specifications. Isomeric SMILES include chiral specification and isotopes.

Standard InChI (IUPAC International Chemical Identifier) and InChIKey InChI is a non-proprietary, standard, textual identifier for chemical substances designed to facilitate linking of information and database searching. An InChIKey is a simplified version of a full InChI, designed for easier web searching.

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)

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Canonical SMILES CCC(=O)N1C/C(=C/C2=C(C=CC=C2)Cl)/C(=O)/C(=C/C3=C(C=CC=C3)Cl)/C1
Isomeric SMILES CCC(=O)N1C/C(=C/C2=C(Cl)C=CC=C2)/C(=O)/C(/C1)=C/C3=C(Cl)C=CC=C3
InChI InChI=1S/C22H19Cl2NO2/c1-2-21(26)25-13-17(11-15-7-3-5-9-19(15)23)22(27)18(14-25)12-16-8-4-6-10-20(16)24/h3-12H,2,13-14H2,1H3/b17-11-,18-12+
InChI Key UMURAXCBRUGMLC-MJZABRMRSA-N

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)
Bioactivity Comments
NL13 has demonstrated anti-tumour actions in vitro and in vivo. It induces cell cycle arrest and apoptosis in prostate cancer models and inhibits prostate cancer (PC3 cell) xenograft growth in mice [1].