guanosine 5'-diphosphate   Click here for help

GtoPdb Ligand ID: 2410

Abbreviated name: GDP
Synonyms: guanosine diphosphate
PDB Ligand
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2D Structure
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Physico-chemical Properties
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Hydrogen bond acceptors 14
Hydrogen bond donors 7
Rotatable bonds 6
Topological polar surface area 272.19
Molecular weight 443.02
XLogP -3.05
No. Lipinski's rules broken 2
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Canonical SMILES OC1C(COP(=O)(OP(=O)(O)O)O)OC(C1O)n1cnc2c1[nH]c(N)nc2=O
Isomeric SMILES O[C@@H]1[C@@H](COP(=O)(OP(=O)(O)O)O)O[C@H]([C@@H]1O)n1cnc2c1[nH]c(N)nc2=O
InChI InChI=1S/C10H15N5O11P2/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(25-9)1-24-28(22,23)26-27(19,20)21/h2-3,5-6,9,16-17H,1H2,(H,22,23)(H2,19,20,21)(H3,11,13,14,18)/t3-,5-,6-,9-/m1/s1
Transporters Moving this Compound Across a Lipid Membrane
Transporter EC number Reaction Reference
Vesicular nucleotide transporter 1
Selectivity at ion channels
Key to terms and symbols Click column headers to sort
Target Sp. Type Action Value Parameter Concentration range (M) Reference
Kir6.1 Ligand is endogenous in the given species Mm Activator Agonist - - 1x10-4 2
Conc range: 1x10-4 M [2]
Voltage: -60.0 – 60.0 mV
Ligand mentioned in the following text fields