tetrahydroharmine   Click here for help

GtoPdb Ligand ID: 13141

Compound class: Natural product
Comment: Tetrahydroharmine is a plant-derived β-carboline alkaloid that is a component of the psychoactive drink Ayahuasca, that is traditionally brewed by indigenous cultures in the Amazon. It is one of the harmala alkaloids produced by plants such as Banisteriopsis caapi and Peganum harmala. Pharmacologically tetrahydroharmine acts to prevent the breakdown of Ayahuasca's principal hallucinogenic substance dimethyltryptamine (DMT) by reversibly inhibiting monoamine oxidase A (MAO-A) [1].

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2D Structure
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2D Structure

An image of the ligand's 2D structure. For small molecules with SMILES these are drawn using the NCI/CADD Chemical Identifier Resolver. Click on the image to access the chemical structure search tool with the ligand pre-loaded in the structure editor. For other types of ligands, e.g. longer nucleotides and peptides, a manually drawn representation of the molecule may be provided.

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Physico-chemical Properties
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Physico-chemical Properties

Calculated molecular properties are available for small molecules and natural products (not peptides). Properties were generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/). All properties were selected to enable the prediction of the Lipinski Rule-of-Five profile or ‘druglikeness’ for each ligand. For more info on each category see the help pages.

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Hydrogen bond acceptors 3
Hydrogen bond donors 2
Rotatable bonds 1
Topological polar surface area 33.29
Molecular weight 216.28
XLogP 1.3
No. Lipinski's rules broken 0

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)
SMILES / InChI / InChIKey
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SMILES / InChI / InChIKey

SMILES (Simplified Molecular Input Line Entry Specification) A specification for unambiguously describing the structure of chemical molecules using short ASCII strings. Canonical SMILES specify a unique representation of the 2D structure without chiral or isotopic specifications. Isomeric SMILES include chiral specification and isotopes.

Standard InChI (IUPAC International Chemical Identifier) and InChIKey InChI is a non-proprietary, standard, textual identifier for chemical substances designed to facilitate linking of information and database searching. An InChIKey is a simplified version of a full InChI, designed for easier web searching.

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)

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Canonical SMILES CC1C2=C(CCN1)C3=C(C=C(C=C3)OC)N2
Isomeric SMILES CC1C2=C(CCN1)C3=C(N2)C=C(C=C3)OC
InChI InChI=1S/C13H16N2O/c1-8-13-11(5-6-14-8)10-4-3-9(16-2)7-12(10)15-13/h3-4,7-8,14-15H,5-6H2,1-2H3
InChI Key ZXLDQJLIBNPEFJ-UHFFFAOYSA-N

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)
Classification Click here for help
Compound class Natural product
IUPAC Name Click here for help
7-methoxy-1-methyl-2,3,4,9-tetrahydro-1H-pyrido[3,4-b]indole
Database Links Click here for help
BindingDB Ligand 50132130
ChEMBL Ligand CHEMBL129208
GtoPdb PubChem SID 491299923
PubChem CID 159809
Search Google for chemical match using the InChIKey ZXLDQJLIBNPEFJ-UHFFFAOYSA-N
Search Google for chemicals with the same backbone ZXLDQJLIBNPEFJ
UniChem Compound Search for chemical match using the InChIKey ZXLDQJLIBNPEFJ-UHFFFAOYSA-N
UniChem Connectivity Search for chemical match using the InChIKey ZXLDQJLIBNPEFJ-UHFFFAOYSA-N

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MedChemExpress
Tetrahydroharmine (links to external site)
Cat. No. HY-125515