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AMX-883   Click here for help

GtoPdb Ligand ID: 14488

Synonyms: AMX883
Compound class: Synthetic organic
Comment: AMX-883 is an orally bioavailable, reversibly covalent, DCAF16 E3 ligase-mediated, BRD9 glue degrader [3]. It was designed to promote maturation and reduce survival of acute myeloid leukaemia (AML) blasts as a therapeutic mechanism. AMX-883 is a structural derivative of the disclosed BRD9-selective degrader AMPTX1 [1-2].
2D Structure
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2D Structure

An image of the ligand's 2D structure. For small molecules with SMILES these are drawn using the NCI/CADD Chemical Identifier Resolver. Click on the image to access the chemical structure search tool with the ligand pre-loaded in the structure editor. For other types of ligands, e.g. longer nucleotides and peptides, a manually drawn representation of the molecule may be provided.

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Physico-chemical Properties
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Physico-chemical Properties

Calculated molecular properties are available for small molecules and natural products (not peptides). Properties were generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/). All properties were selected to enable the prediction of the Lipinski Rule-of-Five profile or ‘druglikeness’ for each ligand. For more info on each category see the help pages.

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Hydrogen bond acceptors 9
Hydrogen bond donors 0
Rotatable bonds 13
Topological polar surface area 95.34
Molecular weight 766.98
XLogP 4.65
No. Lipinski's rules broken 2

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)
SMILES / InChI / InChIKey
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SMILES / InChI / InChIKey

SMILES (Simplified Molecular Input Line Entry Specification) A specification for unambiguously describing the structure of chemical molecules using short ASCII strings. Canonical SMILES specify a unique representation of the 2D structure without chiral or isotopic specifications. Isomeric SMILES include chiral specification and isotopes.

Standard InChI (IUPAC International Chemical Identifier) and InChIKey InChI is a non-proprietary, standard, textual identifier for chemical substances designed to facilitate linking of information and database searching. An InChIKey is a simplified version of a full InChI, designed for easier web searching.

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)

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Canonical SMILES CC(C)[C@@H]1C2=CC(=CC(=C2CCN1C(=O)/C(=C/C(C)(C)CF)/C#N)CN3CCN(CC4=C(C=C(C=C4OC)C5=CC(C)C(=O)C(=C5C)C)OC)CC63CC6)OC
Isomeric SMILES COC1=CC2=C(CCN([C@@H]2C(C)C)C(=O)\C(=C\C(C)(C)CF)\C#N)C(CN3CCN(CC4=C(OC)C=C(C=C4OC)C5=CC(C)C(=O)C(C)=C5C)CC36CC6)=C1
InChI InChI=1S/C46H59FN4O5/c1-28(2)42-38-21-35(54-8)18-33(36(38)11-14-51(42)44(53)34(23-48)22-45(6,7)26-47)24-50-16-15-49(27-46(50)12-13-46)25-39-40(55-9)19-32(20-41(39)56-10)37-17-29(3)43(52)31(5)30(37)4/h17-22,28-29,42H,11-16,24-27H2,1-10H3/b34-22+/t29?,42-/m1/s1
InChI Key SHEVQYBIVIKOPV-CUWJCDLUSA-N

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)
Bioactivity Comments
AMX-883-mediated degradation is selective for BRD9 compared to other bromodomain-containing proteins.
Selectivity at enzymes
Key to terms and symbols Click column headers to sort
Target Sp. Type Action Value Parameter Concentration range (M) Reference
bromodomain containing 9 Hs None Binding - - -
⤷ Molecular glue degrader