Orita-13   Click here for help

GtoPdb Ligand ID: 9985

Synonyms: compound 13 [PMID: 11170644]
PDB Ligand Immunopharmacology Ligand
Compound class: Synthetic organic
Comment: Orita-13 is a prototypical inhibitor of the tautomerase activity of macrophage migration inhibitory factor (MIF) [2].
2D Structure
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2D Structure

An image of the ligand's 2D structure. For small molecules with SMILES these are drawn using the NCI/CADD Chemical Identifier Resolver. Click on the image to access the chemical structure search tool with the ligand pre-loaded in the structure editor. For other types of ligands, e.g. longer nucleotides and peptides, a manually drawn representation of the molecule may be provided.

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Physico-chemical Properties
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Physico-chemical Properties

Calculated molecular properties are available for small molecules and natural products (not peptides). Properties were generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/). All properties were selected to enable the prediction of the Lipinski Rule-of-Five profile or ‘druglikeness’ for each ligand. For more info on each category see the help pages.

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Hydrogen bond acceptors 1
Hydrogen bond donors 3
Rotatable bonds 1
Topological polar surface area 90.9
Molecular weight 270.05
XLogP 3.49
No. Lipinski's rules broken 0

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)
SMILES / InChI / InChIKey
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SMILES / InChI / InChIKey

SMILES (Simplified Molecular Input Line Entry Specification) A specification for unambiguously describing the structure of chemical molecules using short ASCII strings. Canonical SMILES specify a unique representation of the 2D structure without chiral or isotopic specifications. Isomeric SMILES include chiral specification and isotopes.

Standard InChI (IUPAC International Chemical Identifier) and InChIKey InChI is a non-proprietary, standard, textual identifier for chemical substances designed to facilitate linking of information and database searching. An InChIKey is a simplified version of a full InChI, designed for easier web searching.

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)

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Canonical SMILES Oc1ccc2c(c1)occ(c2=O)c1ccc(c(c1)O)O
Isomeric SMILES Oc1ccc2c(c1)occ(c2=O)c1ccc(c(c1)O)O
InChI InChI=1S/C15H10O5/c16-9-2-3-10-14(6-9)20-7-11(15(10)19)8-1-4-12(17)13(18)5-8/h1-7,16-18H
InChI Key DDKGKOOLFLYZDL-UHFFFAOYSA-N

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)
Classification Click here for help
Compound class Synthetic organic
IUPAC Name Click here for help
3-(3,4-dihydroxyphenyl)-7-hydroxychromen-4-one
Synonyms Click here for help
compound 13 [PMID: 11170644]
Database Links Click here for help
BindingDB Ligand 50095997
ChEMBL Ligand CHEMBL13486
GtoPdb PubChem SID 374883872
LIPID MAPS LMPK12050055
PubChem CID 5284648
RCSB PDB Ligand 47X
Search Google for chemical match using the InChIKey DDKGKOOLFLYZDL-UHFFFAOYSA-N
Search Google for chemicals with the same backbone DDKGKOOLFLYZDL
UniChem Compound Search for chemical match using the InChIKey DDKGKOOLFLYZDL-UHFFFAOYSA-N
UniChem Connectivity Search for chemical match using the InChIKey DDKGKOOLFLYZDL-UHFFFAOYSA-N