APD668   Click here for help

GtoPdb Ligand ID: 12151

Synonyms: APD-668 | compound 3k [PMID: 21444206] | compound A129 [WO2005007658A2] [2] | JNJ-28630368 | JNJ28630368
PDB Ligand
Compound class: Synthetic organic
Comment: APD668 (also known as JNJ-28630368) is a synthetic small molecule agonist of the orphan G protein-coupled receptor GPR119 [1,3]. Its in vitro profile and in vivo actions as a GLP-1 secretagogue, reducing triglyceride uptake and hepatic lipogenesis suggests the potential of GPR119 agonists for the treatment of dyslipidemia and non-alcoholic steatohepatitis. However, clinical development of both this compound and the structurally related lead JNJ-38431055 has been terminated.
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Ligand Activity Visualisation Charts

These are box plot that provide a unique visualisation, summarising all the activity data for a ligand taken from ChEMBL and GtoPdb across multiple targets and species. Click on a plot to see the median, interquartile range, low and high data points. A value of zero indicates that no data are available. A separate chart is created for each target, and where possible the algorithm tries to merge ChEMBL and GtoPdb targets by matching them on name and UniProt accession, for each available species. However, please note that inconsistency in naming of targets may lead to data for the same target being reported across multiple charts.

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View interactive charts of activity data across species
2D Structure
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2D Structure

An image of the ligand's 2D structure. For small molecules with SMILES these are drawn using the NCI/CADD Chemical Identifier Resolver. Click on the image to access the chemical structure search tool with the ligand pre-loaded in the structure editor. For other types of ligands, e.g. longer nucleotides and peptides, a manually drawn representation of the molecule may be provided.

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Physico-chemical Properties
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Physico-chemical Properties

Calculated molecular properties are available for small molecules and natural products (not peptides). Properties were generated using the CDK toolkit. All properties were selected to enable the prediction of the Lipinski Rule-of-Five profile or ‘druglikeness’ for each ligand. For more info on each category see the help pages.

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Hydrogen bond acceptors 8
Hydrogen bond donors 0
Rotatable bonds 7
Topological polar surface area 124.37
Molecular weight 477.15
XLogP 3.52
No. Lipinski's rules broken 0
SMILES / InChI / InChIKey
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SMILES / InChI / InChIKey

SMILES (Simplified Molecular Input Line Entry Specification) A specification for unambiguously describing the structure of chemical molecules using short ASCII strings. Canonical SMILES specify a unique representation of the 2D structure without chiral or isotopic specifications. Isomeric SMILES include chiral specification and isotopes.

Standard InChI (IUPAC International Chemical Identifier) and InChIKey InChI is a non-proprietary, standard, textual identifier for chemical substances designed to facilitate linking of information and database searching. An InChIKey is a simplified version of a full InChI, designed for easier web searching.

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Canonical SMILES CC(OC(=O)N1CCC(CC1)Oc1ncnc2c1cnn2c1ccc(cc1F)S(=O)(=O)C)C
Isomeric SMILES CC(C)OC(=O)N1CCC(CC1)Oc1ncnc2c1cnn2c1c(cc(cc1)S(=O)(=O)C)F
InChI InChI=1S/C21H24FN5O5S/c1-13(2)31-21(28)26-8-6-14(7-9-26)32-20-16-11-25-27(19(16)23-12-24-20)18-5-4-15(10-17(18)22)33(3,29)30/h4-5,10-14H,6-9H2,1-3H3
InChI Key XTRUQJBVQBUKSQ-UHFFFAOYSA-N
Bioactivity Comments
APD668 produced anti-dyslipidemic and anti-steatotic activity in animal models of acute hyperlipidemia and chronic (diet induced) steatohepatitis.
Selectivity at GPCRs
Key to terms and symbols Click column headers to sort
Target Sp. Type Action Value Parameter Concentration range (M) Reference
GPR119 Hs Agonist Agonist 8.6 pEC50 - 3
⤷ pEC50 8.6 (EC50 2.7x10-9 M) [3]
Description: Determined in a melanophore assay (Xenopus oocytes expressing GPR119) that reveals receptor-mediated Gs activation as intracellular pigment dispresion.
GPR119 Rn Agonist Agonist 7.5 pEC50 - 3
⤷ pEC50 7.5 (EC50 3.3x10-8 M) [3]
Description: Determined in a melanophore assay (Xenopus oocytes expressing rGpr119) that reveals receptor-mediated Gs activation as intracellular pigment dispresion.