cetocycline   Click here for help

GtoPdb Ligand ID: 10792

Synonyms: A-40728 | Abbott 40728 | chelocardin | compound 1 [PMID: 379332]
Compound class: Synthetic organic
Comment: Cetocycline is an atypical tetracycline type antibacterial [2-3]. It is effective against tetracycline resistant bacteria suggesting that its mechanism of action is different to that of tetracycline [4].
2D Structure
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2D Structure

An image of the ligand's 2D structure. For small molecules with SMILES these are drawn using the NCI/CADD Chemical Identifier Resolver. Click on the image to access the chemical structure search tool with the ligand pre-loaded in the structure editor. For other types of ligands, e.g. longer nucleotides and peptides, a manually drawn representation of the molecule may be provided.

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Physico-chemical Properties
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Physico-chemical Properties

Calculated molecular properties are available for small molecules and natural products (not peptides). Properties were generated using the CDK toolkit. All properties were selected to enable the prediction of the Lipinski Rule-of-Five profile or ‘druglikeness’ for each ligand. For more info on each category see the help pages.

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Hydrogen bond acceptors 6
Hydrogen bond donors 5
Rotatable bonds 1
Topological polar surface area 158.15
Molecular weight 411.13
XLogP 2.15
No. Lipinski's rules broken 0
SMILES / InChI / InChIKey
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SMILES / InChI / InChIKey

SMILES (Simplified Molecular Input Line Entry Specification) A specification for unambiguously describing the structure of chemical molecules using short ASCII strings. Canonical SMILES specify a unique representation of the 2D structure without chiral or isotopic specifications. Isomeric SMILES include chiral specification and isotopes.

Standard InChI (IUPAC International Chemical Identifier) and InChIKey InChI is a non-proprietary, standard, textual identifier for chemical substances designed to facilitate linking of information and database searching. An InChIKey is a simplified version of a full InChI, designed for easier web searching.

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Canonical SMILES CC(=O)C1=C(O)[C@@]2([C@H]([C@H](C1=O)N)Cc1c(C2=O)c(O)c2c(c1C)ccc(c2O)C)O
Isomeric SMILES CC(=O)C1=C(O)[C@@]2([C@H]([C@H](C1=O)N)Cc1c(C2=O)c(O)c2c(c1C)ccc(c2O)C)O
InChI InChI=1S/C22H21NO7/c1-7-4-5-10-8(2)11-6-12-16(23)19(27)13(9(3)24)20(28)22(12,30)21(29)15(11)18(26)14(10)17(7)25/h4-5,12,16,25-26,28,30H,6,23H2,1-3H3/t12-,16+,22+/m0/s1
InChI Key LUYXWZOOMKBUMB-ONJZCGHCSA-N
References
1. Garmaise DL, Chu DT, Bernstein E, Inaba M, Stamm JM. (1979)
Synthesis and antibacterial activity of 2'-substituted chelocardin analogues.
J Med Chem, 22 (5): 559-64. [PMID:379332]
2. Mitscher LA, Swayze JK, Högberg T, Khanna I, Rao GS, Theriault RJ, Kohl W, Hanson C, Egan R. (1983)
Biosynthesis of cetocycline.
J Antibiot, 36 (10): 1405-7. [PMID:6643286]
3. Proctor R, Craig W, Kunin C. (1978)
Cetocycline, tetracycline analog: in vitro studies of antimicrobial activity, serum binding, lipid solubility, and uptake by bacteria.
Antimicrob Agents Chemother, 13 (4): 598-604. [PMID:666291]
4. Stepanek JJ, Lukežič T, Teichert I, Petković H, Bandow JE. (2016)
Dual mechanism of action of the atypical tetracycline chelocardin.
Biochim Biophys Acta, 1864 (6): 645-654. [PMID:26969785]