DS-2969b   Click here for help

GtoPdb Ligand ID: 10985

Synonyms: DS 11960558 (DS-2969b prodrug) | DS-2969 | example 2 [WO2017/056012A1]
Compound class: Synthetic organic
Comment: DS-2969b is an orally active antimicrobial compound that acts as a novel DNA gyrase B inhibitor [1]. It has useful activity against Clostridium difficile [2]
2D Structure
Click here for help

2D Structure

An image of the ligand's 2D structure. For small molecules with SMILES these are drawn using the NCI/CADD Chemical Identifier Resolver. Click on the image to access the chemical structure search tool with the ligand pre-loaded in the structure editor. For other types of ligands, e.g. longer nucleotides and peptides, a manually drawn representation of the molecule may be provided.

✖
Click here for structure editor
Physico-chemical Properties
Click here for help

Physico-chemical Properties

Calculated molecular properties are available for small molecules and natural products (not peptides). Properties were generated using the CDK toolkit. All properties were selected to enable the prediction of the Lipinski Rule-of-Five profile or ‘druglikeness’ for each ligand. For more info on each category see the help pages.

✖
Hydrogen bond acceptors 8
Hydrogen bond donors 3
Rotatable bonds 7
Topological polar surface area 144.5
Molecular weight 428.14
XLogP 2.1
No. Lipinski's rules broken 0
SMILES / InChI / InChIKey
Click here for help

SMILES / InChI / InChIKey

SMILES (Simplified Molecular Input Line Entry Specification) A specification for unambiguously describing the structure of chemical molecules using short ASCII strings. Canonical SMILES specify a unique representation of the 2D structure without chiral or isotopic specifications. Isomeric SMILES include chiral specification and isotopes.

Standard InChI (IUPAC International Chemical Identifier) and InChIKey InChI is a non-proprietary, standard, textual identifier for chemical substances designed to facilitate linking of information and database searching. An InChIKey is a simplified version of a full InChI, designed for easier web searching.

✖
Canonical SMILES CO[C@H]1CN(CC[C@H]1NC(=O)c1nc(c([nH]1)CC)Cl)c1nnc(s1)C(O)(C)C
Isomeric SMILES CO[C@H]1CN(CC[C@H]1NC(=O)c1nc(c([nH]1)CC)Cl)c1nnc(s1)C(O)(C)C
InChI InChI=1S/C17H25ClN6O3S/c1-5-9-12(18)21-13(19-9)14(25)20-10-6-7-24(8-11(10)27-4)16-23-22-15(28-16)17(2,3)26/h10-11,26H,5-8H2,1-4H3,(H,19,21)(H,20,25)/t10-,11+/m1/s1
InChI Key RFKLYBAHWNXIDR-MNOVXSKESA-N
References
1. Barman TK, Kumar M, Mathur T, Namba E, Singh D, Chaira T, Kurosaka Y, Yamada M, Upadhyay DJ, Masuda N. (2018)
In Vitro and In Vivo Activities of DS-2969b, a Novel GyrB Inhibitor, and Its Water-Soluble Prodrug, DS11960558, against Methicillin-Resistant Staphylococcus aureus.
Antimicrob Agents Chemother, 62 (6). [PMID:29610202]
2. Mathur T, Barman TK, Kumar M, Singh D, Kumar R, Khera MK, Yamada M, Inoue SI, Upadhyay DJ, Masuda N. (2018)
In Vitro and In Vivo Activities of DS-2969b, a Novel GyrB Inhibitor, against Clostridium difficile.
Antimicrob Agents Chemother, 62 (4). [PMID:29439962]
3. Vandell AG, Inoue S, Dennie J, Nagasawa Y, Gajee R, Pav J, Zhang G, Zamora C, Masuda N, Senaldi G. (2018)
Phase 1 Study To Assess the Safety, Tolerability, Pharmacokinetics, and Pharmacodynamics of Multiple Oral Doses of DS-2969b, a Novel GyrB Inhibitor, in Healthy Subjects.
Antimicrob Agents Chemother, 62 (5). DOI: 10.1128/AAC.02537-17 [PMID:29439973]