micronomicin

GtoPdb is requesting financial support from commercial users. Please see our sustainability page for more information.

Home
Ligands
micronomicin

GtoPdb Ligand ID: 12162

Synonyms: gentamicin C2b | Sagamicin® | XK-62-2

micronomicin is an approved drug (Japan)

Compound class: Natural product

Comment: Micronomicin belongs to the aminoglycoside class of antibacterial compounds and was originally isolated from Micromonospora sagamiensis [2]. It is an analogue of gentamicin.

micronomicin is commercially available from our sponsors

2D Structure

Physico-chemical Properties

Hydrogen bond acceptors	12
Hydrogen bond donors	8
Rotatable bonds	7
Topological polar surface area	199.73
Molecular weight	463.3
XLogP	-3.34
No. Lipinski's rules broken	2

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)

SMILES / InChI / InChIKey

Canonical SMILES	CNC[C@@H]1CC[C@H]([C@H](O1)O[C@@H]1[C@@H](N)C[C@H]([C@@H]([C@H]1O)O[C@H]1OC[C@]([C@@H]([C@H]1O)NC)(C)O)N)N
Isomeric SMILES	C[C@@]1(CO[C@@H]([C@@H]([C@H]1NC)O)O[C@H]1[C@@H](C[C@@H]([C@H]([C@@H]1O)O[C@@H]1[C@@H](CC[C@H](O1)CNC)N)N)N)O
InChI	InChI=1S/C20H41N5O7/c1-20(28)8-29-19(14(27)17(20)25-3)32-16-12(23)6-11(22)15(13(16)26)31-18-10(21)5-4-9(30-18)7-24-2/h9-19,24-28H,4-8,21-23H2,1-3H3/t9-,10+,11-,12+,13-,14+,15+,16-,17+,18+,19+,20-/m0/s1
InChI Key	DNYGXMICFMACRA-XHEDQWPISA-N

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)