RO3306   Click here for help

GtoPdb Ligand ID: 10095

Synonyms: RO-3306
Compound class: Synthetic organic
Comment: The selectivity profile of RO3306 (structure reported in [2]) suggests that is the most suitable CDK1 chemical probe to be reported (as of October 2018) [1]. Additional non-CDK off-targets that should be considered when interpreting experimental results include PKCδ (Ki 318 nM), SGK (Ki 497 nM) and ERK (Ki 1980 nM) [2].
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Ligand Activity Visualisation Charts

These are box plot that provide a unique visualisation, summarising all the activity data for a ligand taken from ChEMBL and GtoPdb across multiple targets and species. Click on a plot to see the median, interquartile range, low and high data points. A value of zero indicates that no data are available. A separate chart is created for each target, and where possible the algorithm tries to merge ChEMBL and GtoPdb targets by matching them on name and UniProt accession, for each available species. However, please note that inconsistency in naming of targets may lead to data for the same target being reported across multiple charts.

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View interactive charts of activity data across species
2D Structure
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2D Structure

An image of the ligand's 2D structure. For small molecules with SMILES these are drawn using the NCI/CADD Chemical Identifier Resolver. Click on the image to access the chemical structure search tool with the ligand pre-loaded in the structure editor. For other types of ligands, e.g. longer nucleotides and peptides, a manually drawn representation of the molecule may be provided.

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Physico-chemical Properties
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Physico-chemical Properties

Calculated molecular properties are available for small molecules and natural products (not peptides). Properties were generated using the CDK toolkit. All properties were selected to enable the prediction of the Lipinski Rule-of-Five profile or ‘druglikeness’ for each ligand. For more info on each category see the help pages.

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Hydrogen bond acceptors 4
Hydrogen bond donors 1
Rotatable bonds 4
Topological polar surface area 107.89
Molecular weight 351.05
XLogP 3.05
No. Lipinski's rules broken 0
SMILES / InChI / InChIKey
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SMILES / InChI / InChIKey

SMILES (Simplified Molecular Input Line Entry Specification) A specification for unambiguously describing the structure of chemical molecules using short ASCII strings. Canonical SMILES specify a unique representation of the 2D structure without chiral or isotopic specifications. Isomeric SMILES include chiral specification and isotopes.

Standard InChI (IUPAC International Chemical Identifier) and InChIKey InChI is a non-proprietary, standard, textual identifier for chemical substances designed to facilitate linking of information and database searching. An InChIKey is a simplified version of a full InChI, designed for easier web searching.

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Canonical SMILES O=C1N=C(SC1=Cc1ccc2c(c1)cccn2)NCc1cccs1
Isomeric SMILES O=C1N=C(SC1=Cc1ccc2c(c1)cccn2)NCc1cccs1
InChI InChI=1S/C18H13N3OS2/c22-17-16(24-18(21-17)20-11-14-4-2-8-23-14)10-12-5-6-15-13(9-12)3-1-7-19-15/h1-10H,11H2,(H,20,21,22)
InChI Key XOLMRFUGOINFDQ-UHFFFAOYSA-N
Bioactivity Comments
RO3306 arrests HCT-116 colon carcinoma cells in the G2/M phase of the cell cycle, which is consistent with inhibition of CDK1 [1].
Selectivity at enzymes
Key to terms and symbols Click column headers to sort
Target Sp. Type Action Value Parameter Concentration range (M) Reference
cyclin dependent kinase 1 Hs Inhibitor Inhibition 7.3 pIC50 - 1
⤷ pIC50 7.3 (IC50 4.7x10-8 M) [1]
Description: In vitro inhibition of human CDK1/cyclin B.
cyclin dependent kinase 2 Hs Inhibitor Inhibition 6.6 – 6.7 pIC50 - 1
⤷ pIC50 6.7 (IC50 1.86x10-7 M) [1]
Description: In vitro inhibition of human CDK2/cyclin E.
pIC50 6.6 (IC50 2.53x10-7 M) [1]
Description: In vitro inhibition of human CDK2/cyclin A.
cyclin dependent kinase 5 Hs Inhibitor Inhibition 5.6 pIC50 - 1
⤷ pIC50 5.6 (IC50 2.48x10-6 M) [1]
Description: In vitro inhibition of human CDK5/p25.