dexmedetomidine   Click here for help

GtoPdb Ligand ID: 521

Synonyms: Dexdor® | Igalmi® (dexmedetomidine sublingual film) | MPV 1440 | Precedex®
Approved drug PDB Ligand
dexmedetomidine is an approved drug (FDA (1999), EMA (2011))
Compound class: Synthetic organic
Comment: Dexmedetomidine is a somewhat selective α2-adrenoceptor agonist with sedative properties.
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Ligand Activity Visualisation Charts

These are box plot that provide a unique visualisation, summarising all the activity data for a ligand taken from ChEMBL and GtoPdb across multiple targets and species. Click on a plot to see the median, interquartile range, low and high data points. A value of zero indicates that no data are available. A separate chart is created for each target, and where possible the algorithm tries to merge ChEMBL and GtoPdb targets by matching them on name and UniProt accession, for each available species. However, please note that inconsistency in naming of targets may lead to data for the same target being reported across multiple charts.

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View interactive charts of activity data across species
2D Structure
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2D Structure

An image of the ligand's 2D structure. For small molecules with SMILES these are drawn using the NCI/CADD Chemical Identifier Resolver. Click on the image to access the chemical structure search tool with the ligand pre-loaded in the structure editor. For other types of ligands, e.g. longer nucleotides and peptides, a manually drawn representation of the molecule may be provided.

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Click here for structure editor
Physico-chemical Properties
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Physico-chemical Properties

Calculated molecular properties are available for small molecules and natural products (not peptides). Properties were generated using the CDK toolkit. All properties were selected to enable the prediction of the Lipinski Rule-of-Five profile or ‘druglikeness’ for each ligand. For more info on each category see the help pages.

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Hydrogen bond acceptors 1
Hydrogen bond donors 1
Rotatable bonds 2
Topological polar surface area 28.68
Molecular weight 200.13
XLogP 3.13
No. Lipinski's rules broken 0
SMILES / InChI / InChIKey
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SMILES / InChI / InChIKey

SMILES (Simplified Molecular Input Line Entry Specification) A specification for unambiguously describing the structure of chemical molecules using short ASCII strings. Canonical SMILES specify a unique representation of the 2D structure without chiral or isotopic specifications. Isomeric SMILES include chiral specification and isotopes.

Standard InChI (IUPAC International Chemical Identifier) and InChIKey InChI is a non-proprietary, standard, textual identifier for chemical substances designed to facilitate linking of information and database searching. An InChIKey is a simplified version of a full InChI, designed for easier web searching.

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Canonical SMILES Cc1cccc(c1C)C(c1c[nH]cn1)C
Isomeric SMILES Cc1cccc(c1C)[C@@H](c1c[nH]cn1)C
InChI InChI=1S/C13H16N2/c1-9-5-4-6-12(10(9)2)11(3)13-7-14-8-15-13/h4-8,11H,1-3H3,(H,14,15)/t11-/m0/s1
InChI Key CUHVIMMYOGQXCV-NSHDSACASA-N
Classification Click here for help
Compound class Synthetic organic
Approved drug? Yes (FDA (1999), EMA (2011))
IUPAC Name Click here for help
4-[(1S)-1-(2,3-dimethylphenyl)ethyl]-3H-imidazole
International Nonproprietary Names Click here for help
INN number INN
6277 dexmedetomidine
Synonyms Click here for help
Dexdor® | Igalmi® (dexmedetomidine sublingual film) | MPV 1440 | Precedex®
Database Links Click here for help
Specialist databases
GPCRdb Ligand dexmedetomidine
Other databases
BindingDB Ligand 50241196
CAS Registry No. 113775-47-6 (source: Scifinder)
ChEBI CHEBI:4466
ChEMBL Ligand CHEMBL778
DrugBank Ligand DB00633
DrugCentral Ligand 835
GtoPdb PubChem SID 135650174
PubChem CID 5311068
RCSB PDB Ligand CZX
Search Google for chemical match using the InChIKey CUHVIMMYOGQXCV-NSHDSACASA-N
Search Google for chemicals with the same backbone CUHVIMMYOGQXCV
Search PubMed clinical trials dexmedetomidine
Search PubMed titles dexmedetomidine
Search PubMed titles/abstracts dexmedetomidine
UniChem Compound Search for chemical match using the InChIKey CUHVIMMYOGQXCV-NSHDSACASA-N
UniChem Connectivity Search for chemical match using the InChIKey CUHVIMMYOGQXCV-NSHDSACASA-N
Wikipedia Dexmedetomidine