boromycin   Click here for help

GtoPdb Ligand ID: 13447

Antimalarial Ligand
Compound class: Natural product
Comment: Boromycin is a polyether macrolide, initially isolated from a new strain of Streptomyces antibioticus (ETH 28 829), and reported as the first boron-containing natural product to be identified [3-4]. It is a broad-spectrum antimicrobial compound, with potent activity against a number of Gram-positive bacteria, viruses, and protozoan parasites [1-2,4-5].

The Malaria tab on this ligand page provides additional curator comments of relevance to the Guide to MALARIA PHARMACOLOGY.
2D Structure
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Physico-chemical Properties
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Hydrogen bond acceptors 16
Hydrogen bond donors 3
Rotatable bonds 5
Topological polar surface area 209.99
Molecular weight 878.87
XLogP 5.74
No. Lipinski's rules broken 3
SMILES / InChI / InChIKey
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Canonical SMILES CC(C)[C@H](C(=O)O[C@H](C)[C@@H]1C/C=C/CC[C@@H](C(C)(C)[C@@H]2CC[C@@H](C)[C@]3(C4C(=O)O[C@H]5C[C@@H](CCC[C@H](C(C)(C)[C@@H]6CC[C@@H](C)[C@]7(C(C(=O)O1)O[B-](O4)(O7)O3)O6)O)O[C@@H]5C)O2)O)N
Isomeric SMILES [B-]123OC4C(=O)O[C@@H](C/C=C/CC[C@@H](C([C@@H]5CC[C@H]([C@@](O1)(O5)C(O2)C(=O)O[C@H]6C[C@@H](CCC[C@H](C([C@@H]7CC[C@H]([C@@]4(O3)O7)C)(C)C)O)O[C@@H]6C)C)(C)C)O)[C@@H](C)OC(=O)[C@@H](C(C)C)N
InChI InChI=1S/C45H73BNO15/c1-24(2)36(47)39(50)54-27(5)30-16-12-11-13-17-32(48)42(7,8)34-21-19-26(4)45(57-34)38-41(52)56-31-23-29(53-28(31)6)15-14-18-33(49)43(9,10)35-22-20-25(3)44(58-35)37(40(51)55-30)59-46(60-38,61-44)62-45/h11-12,24-38,48-49H,13-23,47H2,1-10H3/q-1/b12-11+/t25-,26-,27-,28-,29-,30+,31+,32+,33-,34+,35+,36-,37?,38?,44+,45+,46?/m1/s1
InChI Key OOBFYEMEQCZLJL-XURNZCJASA-N
Bioactivity Comments
Boromycin demonstrates potent Gram-positive antibacterial activity in vitro, including against Staphylococcus and Enterococcus spp. (MIC90 of 0.2-0.3 μM) but not against the Gram-negative bacteria assayed [6]. The same study showed that the compound has antimycobacterial activity with an MIC90 of 0.2 μM for Mycobacterium tuberculosis H37Rv.
The interaction table below provides data from an evaluation of the antimalarial activity of boromycin in vitro, using a panel of P. falciparum strains. Boromycin demonstrates rapid asexual blood stage activity [2] which is in contrast to antibacterial compounds such clindamycin and doxycycline, that kill the malaria parasite in the lifecycle after treatment starts.
Whole organism assay data
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MOA/likely target Sp. Assay description Type Action Value Parameter Concentration range (M) Reference
Unknown MOA Pf7G8 Parasite growth inhibition assay - - 9.4 pIC50 - 2
pIC50 9.4 (IC50 4x10-10 M) [2]
Lifecycle stages: Plasmodium asexual blood stage (erythrocytic merozoite, trophozoite, erythrocytic schizont)
Unknown MOA PfDd2 Parasite growth inhibition assay - - 9.2 pIC50 - 2
pIC50 9.2 (IC50 6x10-10 M) [2]
Lifecycle stages: Plasmodium asexual blood stage (erythrocytic merozoite, trophozoite, erythrocytic schizont)
Unknown MOA PfK1 Parasite growth inhibition assay - - 9.1 pIC50 - 2
pIC50 9.1 (IC50 7x10-10 M) [2]
Unknown MOA Pf3D7 Parasite growth inhibition assay - - 9.1 pIC50 - 2
pIC50 9.1 (IC50 9x10-10 M) [2]
Lifecycle stages: Plasmodium asexual blood stage (erythrocytic merozoite, trophozoite, erythrocytic schizont)
Unknown MOA Pf3D7 Parasite late stage (IV–V) gametocyte assay - - 8.1 pIC50 - 2
pIC50 8.1 (IC50 8.5x10-9 M) [2]